schicluster

Subpackages

• schicluster.compartment
  • schicluster.compartment.call_compartment
• schicluster.cool
  • schicluster.cool.contact_distance
  • schicluster.cool.merge
  • schicluster.cool.remove_blacklist
  • schicluster.cool.scool
  • schicluster.cool.utilities
• schicluster.dev
  • schicluster.dev.concat_cell
  • schicluster.dev.generate_matrix
  • schicluster.dev.imputecell
  • schicluster.dev.loop_sc
  • schicluster.dev.merge_cell
• schicluster.diff
  • schicluster.diff.domain
  • schicluster.diff.loop
• schicluster.domain
  • schicluster.domain.call_domain
• schicluster.embedding
  • schicluster.embedding.calc_embedding
• schicluster.impute
  • schicluster.impute.impute_chromosome
  • schicluster.impute.merge_cell_to_group
  • schicluster.impute.snakemake
• schicluster.loop
  • schicluster.loop.compare_loop
  • schicluster.loop.loop_bkg
  • schicluster.loop.loop_calling
  • schicluster.loop.merge_cell_to_group
  • schicluster.loop.merge_group
  • schicluster.loop.merge_raw_matrix
  • schicluster.loop.shuffle_fdr
  • schicluster.loop.snakemake
• schicluster.zarr
  • schicluster.zarr.cool_ds
  • schicluster.zarr.loop_ds

Submodules

• schicluster.__main__
• schicluster._hicluster_internal
• schicluster._version
• schicluster.schicluster