scHiCluster

scHiCluster is a comprehensive python package for single-cell chromosome contact data analysis. It includes the functions and tutorials for

• Identification of cell types (clusters)

• Loop calling in cell types

• Differential loop calling between cell types

• Domain calling in single cells

• Differential domain boundary calling between cell types

• Compartment calling in single cells

• Differential compartment calling between cell types

• Correlation between 3D genome features with other molecular modalities

Fig. 1 scHiCluster workflow. Click the figure for clickable links.