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scHiCluster

scHiCluster

Tutorial

Tan et al. Cell 2021.
Human Brain Atlas

COMMAND LINE TOOLS

hicluster filter-contact
hicluster prepare-impute
hicluster contact-distance
hicluster embedding
hicluster cpg-ratio
hicluster compartment
hicluster domain
hicluster gene-score
hicluster merge-cell-raw
hicluster merge-cool

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Differential loops

Differential loops#

Differential loops between major types, and correlation with mC, ATAC, and RNA

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RNA correlated compartment

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ANOVA of loop matrices across cell types

By Jingtian Zhou

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