schicluster.dev.imputecell

Contents

`schicluster.dev.imputecell`#

Module Contents#

hg38dim = [248956422, 242193529, 198295559, 190214555, 181538259, 170805979, 159345973, 145138636,...[source]#

hg19dim = [249250621, 243199373, 198022430, 191154276, 180915260, 171115067, 159138663, 146364022,...[source]#

mm10dim = [195471971, 182113224, 160039680, 156508116, 151834684, 149736546, 145441459, 129401213,...[source]#

random_walk_cpu(P, rp, tol, dist, spr)[source]#

impute_cell(indir, outdir, cell, chrom, res, genome, mode, logscale=False, pad=1, std=1, rp=0.5, tol=0.01, rwr_dist=500000000, rwr_sparsity=1, output_dist=500000000, output_format='hdf')[source]#