schicluster.domain.call_domain

Module Contents

PACKAGE_DIR

install_r_package(name)

domain_df_to_boundary(cool, total_results, resolution)

single_chrom_calculate_insulation_score(matrix, window_size=10, save_count=False)

call_domain_and_insulation(cell_url, output_prefix, resolution=25000, window_size=10, save_count=False)

aggregate_boundary(cell_table, temp_dir, bins, output_path)

aggregate_insulation(cell_table, temp_dir, bins, output_path, save_count=False)

multiple_call_domain_and_insulation(cell_table_path, output_prefix, resolution=25000, window_size=10, save_count=False, cpu=10)