schicluster.embedding.calc_embedding

Module Contents

make_idx(n_dim, dist, resolution)

make_chrom_matrix(cell_table, chrom, nbins, output_path, scale_factor, dist, resolution)

svd(input_path, dim, output_prefix, save_model=True, norm_sig=True)

embedding(cell_table_path, output_dir, chrom_size_path=None, dim=50, dist=1000000, resolution=100000, scale_factor=100000, norm_sig=True, cpu=1, save_model=False, save_raw=True)