schicluster.compartment

Submodules

• schicluster.compartment.call_compartment

Package Contents

multiple_cell_compartment(cell_table_path, output_prefix, cpg_profile_path, cpu=10, calc_strength=False, mode='cool', chrom_size_path=None, resolution=100000, chrom1=1, pos1=2, chrom2=5, pos2=6)

get_cpg_profile(fasta_path, hdf_output_path, cell_url=None, chrom_size_path=None, resolution=100000)